Community-Analyzer: A platform for visualizing and comparing microbial community structure across microbiomes
نویسندگان
چکیده
منابع مشابه
EMPeror: a tool for visualizing high-throughput microbial community data
BACKGROUND As microbial ecologists take advantage of high-throughput sequencing technologies to describe microbial communities across ever-increasing numbers of samples, new analysis tools are required to relate the distribution of microbes among larger numbers of communities, and to use increasingly rich and standards-compliant metadata to understand the biological factors driving these relati...
متن کاملComparing community structure identification
We compare recent approaches to community structure identification in terms of sensitivity and computational cost. The recently proposed modularity measure is revisited and the performance of the methods as applied to ad hoc networks with known community structure, is compared. We find that the most accurate methods tend to be more computationally expensive, and that both aspects need to be con...
متن کاملIntroducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.
mothur aims to be a comprehensive software package that allows users to use a single piece of software to analyze community sequence data. It builds upon previous tools to provide a flexible and powerful software package for analyzing sequencing data. As a case study, we used mothur to trim, screen, and align sequences; calculate distances; assign sequences to operational taxonomic units; and d...
متن کاملComparing the Effect of Kerosene Pollution on Forest and Industrial Soil Microbial Community
Kerosene is the colorless liquid and slightly heavier than gasoline thatspecific odor removes after evaporation. Soil and underground water source arecontaminated with different pollutants such as petroleum hydrocarbons. These pollutantshave various negative environmental effects on soil and surrounding environment. Theaim of this research is to understand the effect of kerosene pollution on tw...
متن کاملComparing the Effect of Kerosene Pollution on Forest and Industrial Soil Microbial Community
Kerosene is the colorless liquid and slightly heavier than gasoline thatspecific odor removes after evaporation. Soil and underground water source arecontaminated with different pollutants such as petroleum hydrocarbons. These pollutantshave various negative environmental effects on soil and surrounding environment. Theaim of this research is to understand the effect of kerosene pollution on tw...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Genomics
سال: 2013
ISSN: 0888-7543
DOI: 10.1016/j.ygeno.2013.08.004